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Works (26)

Fluid-derived lattices for unbiased modeling of bacterial colony growth

2024-12-23 | Preprint
Contributors: Bryan Verhoef; Rutger Hermsen; Joost de Graaf
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Crossref

Multiscale selection in spatially structured populations

Proceedings of the Royal Society B: Biological Sciences
2024-05 | Journal article
Contributors: Hilje M. Doekes; Rutger Hermsen
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Crossref

Emergent multilevel selection in a simple spatial model of the evolution of altruism

PLOS Computational Biology
2022-10-25 | Journal article
Contributors: Rutger Hermsen; James A.R. Marshall
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Crossref

The interplay between metabolic stochasticity and regulation in single E. coli cells

2022-08-29 | Preprint
Contributors: Martijn Wehrens; Laurens H.J. Krah; Benjamin D. Towbin; Rutger Hermsen; Sander J. Tans
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Crossref

Multiscale selection in spatially structured populations

2021-12-21 | Preprint
Contributors: Hilje M. Doekes; Rutger Hermsen
Source: check_circle
Crossref

Emergent multilevel selection in a simple spatial model of the evolution of altruism

2021-12-01 | Preprint
Contributors: Rutger Hermsen
Source: check_circle
Crossref

Hierarchical and simultaneous utilization of carbon substrates: mechanistic insights, physiological roles, and ecological consequences

Current Opinion in Microbiology
2021-10 | Journal article
Contributors: Hiroyuki Okano; Rutger Hermsen; Terence Hwa
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Crossref

The effect of natural selection on the propagation of protein expression noise to bacterial growth

PLOS Computational Biology
2021-07-19 | Journal article
Contributors: Laurens H. J. Krah; Christopher Rao; Rutger Hermsen
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Crossref

Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain

eLife
2021-06-14 | Journal article
Contributors: Michael Sheinman; Ksenia Arkhipova; Peter F Arndt; Bas E Dutilh; Rutger Hermsen; Florian Massip
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Crossref

Repeated outbreaks drive the evolution of bacteriophage communication

eLife
2021-01-18 | Journal article
Contributors: Hilje M Doekes; Glenn A Mulder; Rutger Hermsen
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Crossref

How repeated outbreaks drive the evolution of bacteriophage communication: Insights from a mathematical model

2020-04-30 | Preprint
Contributors: Hilje M. Doekes; Glenn A. Mulder; Rutger Hermsen
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Crossref

The naive T-cell receptor repertoire has an extremely broad distribution of clone sizes

eLife
2020-03-18 | Journal article
Contributors: Peter C de Greef; Theres Oakes; Bram Gerritsen; Mazlina Ismail; James M Heather; Rutger Hermsen; Benjamin Chain; Rob J de Boer
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Crossref

Regulation underlying hierarchical and simultaneous utilization of carbon substrates by flux sensors in Escherichia coli

Nature Microbiology
2019-12-09 | Journal article
Contributors: Hiroyuki Okano; Rutger Hermsen; Karl Kochanowski; Terence Hwa
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Crossref

Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations

PLOS Computational Biology
2019-08-30 | Journal article
Contributors: Hilje M. Doekes; Jonas Schluter; Rob J. de Boer; Rutger Hermsen
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Crossref

Noise propagation in an integrated model of bacterial gene expression and growth

PLOS Computational Biology
2018-10-05 | Journal article
Contributors: Istvan T. Kleijn; Alexandre V. Morozov; Laurens H. J. Krah; Rutger Hermsen
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Crossref

Noise propagation in an integrated model of bacterial gene expression and growth

[]
2018-01-10 | Preprint
Source: Self-asserted source
Rutger Hermsen
grade
Preferred source (of 2)‎

Effects of DNA oxidation on the evolution of genomes

[]
2017-06-15 | Preprint
Source: Self-asserted source
Rutger Hermsen

The adaptation rate of a quantitative trait in an environmental gradient

Physical Biology
2016-11-30 | Journal article
Contributors: R Hermsen
Source: check_circle
Crossref

A growth-rate composition formula for the growth of E. coli on co-utilized carbon substrates

Molecular Systems Biology
2015 | Journal article
WOSUID:

WOS:000354022300002

Contributors: Hermsen, Rutger; Okano, Hiroyuki; You, Conghui; Werner, Nicole; Hwa, Terence
Source: Self-asserted source
Rutger Hermsen via ResearcherID

The Innate Growth Bistability and Fitness Landscapes of Antibiotic-Resistant Bacteria

Science
2013 | Journal article
DOI:

10.1126/science.1237435

Part of ISSN:

0036-8075; 1095-9203

Contributors: Deris, J. Barrett; Kim, Minsu; Zhang, Zhongge; Okano, Hiroyuki; Hermsen, Rutger; Groisman, Alexander; Hwa, Terence
Source: Self-asserted source
Rutger Hermsen via ResearcherID

On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient

Proceedings of the National Academy of Sciences of the United States of America
2012 | Journal article
DOI:

10.1073/pnas.1117716109

Contributors: Hermsen, Rutger; Deris, J. Barrett; Hwa, Terence
Source: Self-asserted source
Rutger Hermsen via ResearcherID

Speed, Sensitivity, and Bistability in Auto-activating Signaling Circuits

Plos Computational Biology
2011 | Journal article
DOI:

10.1371/journal.pcbi.1002265

Contributors: Hermsen, Rutger; Erickson, David W.; Hwa, Terence
Source: Self-asserted source
Rutger Hermsen via ResearcherID

Combinatorial Gene Regulation Using Auto-Regulation

Plos Computational Biology
2010 | Journal article
DOI:

10.1371/journal.pcbi.1000813

Contributors: Hermsen, Rutger; Ursem, Bas; ten Wolde, Pieter Rein
Source: Self-asserted source
Rutger Hermsen via ResearcherID

Sources and Sinks: A Stochastic Model of Evolution in Heterogeneous Environments

Physical Review Letters
2010 | Journal article
DOI:

10.1103/PhysRevLett.105.248104

Contributors: Hermsen, Rutger; Hwa, Terence
Source: Self-asserted source
Rutger Hermsen via ResearcherID

Chance and necessity in chromosomal gene distributions

Trends in Genetics
2008 | Journal article
DOI:

10.1016/j.tig.2008.02.004

Contributors: Hermsen, Rutger; ten Wolde, Pieter Rein; Teichmann, Sarah
Source: Self-asserted source
Rutger Hermsen via ResearcherID

Transcriptional regulation by competing transcription factor modules

Plos Computational Biology
2006 | Journal article
DOI:

10.1371/journal.pcbi.0020164

Contributors: Hermsen, Rutger; Tans, Sander; ten Wolde, Pieter Rein
Source: Self-asserted source
Rutger Hermsen via ResearcherID

Peer review (2 reviews for 2 publications/grants)

Review activity for Nature communications (1)
Review activity for PLoS computational biology. (1)