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http://www.jaclyn-taroni.com

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United States

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Employment (3)

Alex's Lemonade Stand Foundation: Philadelphia, Pennsylvania, US

2021-03 to present | Director (Childhood Cancer Data Lab)
Employment
Source: Self-asserted source
Jaclyn Taroni

Alex's Lemonade Stand Foundation: Philadelphia, Pennsylvania, US

2018-07 to 2021-03 | Principal Data Scientist (Childhood Cancer Data Lab)
Employment
Source: Self-asserted source
Jaclyn Taroni

University of Pennsylvania Perelman School of Medicine: Philadelphia, PA, US

2016-05 to 2018-07 | Postdoctoral Researcher (Systems Pharmacology and Translation Therapeutics)
Employment
Source: Self-asserted source
Jaclyn Taroni

Education and qualifications (2)

Dartmouth College Geisel School of Medicine: Hanover, NH, US

2011-08 to 2016-05 | PhD (Genetics)
Education
Source: Self-asserted source
Jaclyn Taroni

Lehigh University: Bethlehem, PA, US

2007-08 to 2011-01 | BS (Biology)
Education
Source: Self-asserted source
Jaclyn Taroni

Works (24)

Machine learning in rare disease

Nature Methods
2023-06 | Journal article
DOI: 10.1038/s41592-023-01886-z
Contributors: Jineta Banerjee; Jaclyn N. Taroni; Robert J. Allaway; Deepashree Venkatesh Prasad; Justin Guinney; Casey Greene
Source: check_circle
Crossref

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Communications Biology
2023-02-25 | Journal article
DOI: 10.1038/s42003-023-04588-6
Contributors: Steven M. Foltz; Casey S. Greene; Jaclyn N. Taroni
Source: check_circle
Crossref

Ten simple rules for large-scale data processing

PLOS Computational Biology
2022-02-10 | Journal article
DOI: 10.1371/journal.pcbi.1009757
Contributors: Arkarachai Fungtammasan; Alexandra Lee; Jaclyn Taroni; Kurt Wheeler; Chen-Shan Chin; Sean Davis; Casey Greene
Source: check_circle
Crossref

Integrative analysis identifies candidate tumor microenvironment and intracellular signaling pathways that define tumor heterogeneity in NF1

2020-01-14 | Preprint
DOI: 10.1101/2020.01.13.904771
Contributors: Jineta Banerjee; Robert J Allaway; Jaclyn N Taroni; Aaron Baker; Xiaochun Zhang; Chang In Moon; Christine A Pratilas; Jaishri O Blakeley; Justin Guinney; Angela Hirbe et al.
Source: check_circle
Crossref

Making Workshops Work: Insights from EDAMAME

mSystems
2019-08-27 | Journal article
DOI: 10.1128/mSystems.00467-19
Contributors: Jaclyn N. Taroni
Source: check_circle
Crossref

Integrated machine learning pipeline for aberrant biomarker enrichment (i-mAB): characterizing clusters of differentiation within a compendium of systemic lupus erythematosus patients.

AMIA ... Annual Symposium proceedings. AMIA Symposium
2018-12-05 | Journal article
PMID: 30815180
PMC: PMC6371296
Source: Self-asserted source
Jaclyn Taroni

MultiPLIER: a transfer learning framework for transcriptomics reveals systemic features of rare disease

2018-08-20 | Other
DOI: 10.1101/395947
Contributors: Jaclyn N. Taroni; Peter C. Grayson; Qiwen Hu; Sean Eddy; Matthias Kretzler; Peter A. Merkel; Casey S. Greene
Source: check_circle
Crossref

Mycophenolate Mofetil Treatment of Systemic Sclerosis Reduces Myeloid Cell Numbers and Attenuates the Inflammatory Gene Signature in Skin

Journal of Investigative Dermatology
2018-06 | Journal article
DOI: 10.1016/j.jid.2018.01.006
Contributors: Monique Hinchcliff; Diana M. Toledo; Jaclyn N. Taroni; Tammara A. Wood; Jennifer M. Franks; Michael S. Ball; Aileen Hoffmann; Sapna M. Amin; Ainah U. Tan; Kevin Tom et al.
Source: check_circle
Crossref

A Functional Genomic Meta-Analysis of Clinical Trials in Systemic Sclerosis: Toward Precision Medicine and Combination Therapy

Journal of Investigative Dermatology
2017-05 | Journal article
DOI: 10.1016/j.jid.2016.12.007
Contributors: Jaclyn N. Taroni; Viktor Martyanov; J. Matthew Mahoney; Michael L. Whitfield
Source: check_circle
Crossref

A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis

Genome Medicine
2017-03 | Journal article
DOI: 10.1186/s13073-017-0417-1
Part of ISSN: 1756-994X
Source: Self-asserted source
Jaclyn Taroni

Cross-Platform Normalization Enables Machine Learning Model Training On Microarray And RNA-Seq Data Simultaneously

2017-03-20 | Other
DOI: 10.1101/118349
Contributors: Jaclyn N Taroni; Casey S Greene
Source: check_circle
Crossref

A functional genomic meta-analysis of clinical trials in systemic sclerosis: towards precision medicine and combination therapy

2016-11-13 | Preprint
DOI: 10.1101/087361
Contributors: Jaclyn N. Taroni; Viktor Martyanov; J. Matthew Mahoney; Michael L. Whitfield
Source: check_circle
Crossref

Integrative networks illuminate biological factors underlying gene-disease associations

2016-08-28 | Preprint
DOI: 10.1101/062695
Contributors: Arjun Krishnan; Jaclyn N. Taroni; Casey S. Greene
Source: check_circle
Crossref

A Novel Multi-network Approach Reveals Tissue-specific Cellular Modulators of Fibrosis in Systemic Sclerosis, Pulmonary Fibrosis and Pulmonary Arterial Hypertension

2016-02-06 | Preprint
DOI: 10.1101/038950
Contributors: Jaclyn N Taroni; Casey S Greene; Viktor Martyanov; Tammara A Wood; Romy Christmann; Harrison W Farber; Robert A Lafyatis; Christopher P Denton; Monique E Hinchcliff; Patricia A Pioli et al.
Source: check_circle
Crossref

A Multimodal Strategy Used by a Large c-di-GMP Network.

Journal article
PMID: 29311282
Source: Self-asserted source
Jaclyn Taroni

Experimentally-derived fibroblast gene signatures identify molecular pathways associated with distinct subsets of systemic sclerosis patients in three independent cohorts.

Journal article
PMID: 25607805
Source: Self-asserted source
Jaclyn Taroni

Identification of Optimal Mouse Models of Systemic Sclerosis by Interspecies Comparative Genomics.

Journal article
PMID: 26945694
Source: Self-asserted source
Jaclyn Taroni

Metabolic pathways and immunometabolism in rare kidney diseases.

Journal article
PMID: 29724730
Source: Self-asserted source
Jaclyn Taroni

Molecular characterization of systemic sclerosis esophageal pathology identifies inflammatory and proliferative signatures.

Journal article
PMID: 26220546
Source: Self-asserted source
Jaclyn Taroni

Roles of mouse sperm-associated alpha-L-fucosidases in fertilization.

Journal issue or edition
PMID: 23426913
Source: Self-asserted source
Jaclyn Taroni

Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis.

Journal article
PMID: 26801089
Source: Self-asserted source
Jaclyn Taroni

Systems Biology Approaches to Understanding the Pathogenesis of Systemic Sclerosis
Source: Self-asserted source
Jaclyn Taroni

Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms.

Journal article
PMID: 25569146
Source: Self-asserted source
Jaclyn Taroni

The mechanistic implications of gene expression studies in SSc: Insights from Systems Biology.

Journal article
PMID: 29520335
Source: Self-asserted source
Jaclyn Taroni
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