Personal information

Websites & social links

http://mme.kaust.edu.sa/Pages/Mamoon_Rashid.aspx

Keywords

Bioinformatics, Genomics, Machine Learning, Database

Countries

Saudi Arabia

Biography

I obtained a Master degree in Biotechnology and PhD in bioinformatics. Currently, I am working as a postdoctoral researcher in King Abdullah University of Science and Technology (KAUST). I am affiliated with Red Sea Research Center and working with Prof Uli Stingl. Current research area is next generation sequence analysis of bacteria and archaea from Red sea brine pools and pelagic microbes. We have sequenced a lot of single cell genomes and metagenomes from different gradients of the Red sea and investigating unique features of the microbes inhabiting the oligotrophic and extreme environments.

Activities

Collapse all

Employment (4)

King Abdullah University of Science and Technology: Thuwal, Jeddah, SA

2012-11 to present | Postdoctoral Fellow (Red Sea Research Center)
Employment
Source: Self-asserted source
Mamoon Rashid

King Abdullah University of Science and Technology (KAUST): Thuwal, SA

2012-11-07 to 2015-09-30 | Post-Doctoral Fellow (Red Sea Research Center)
Employment
Source: check_circle
KAUST Repository

King Abdullah University of Science and Technology (KAUST): Thuwal, SA

2010-11-01 to 2012-11-06 | Post-Doctoral Fellow (Computational Bioscience Research Center)
Employment
Source: check_circle
KAUST Repository

King Abdullah University of Science and Technology: Thuwal, Jeddah, SA

2010-11 to 2012-10 | Postdoctoral Fellow (CBRC)
Employment
Source: Self-asserted source
Mamoon Rashid

Education and qualifications (1)

Institute of Microbial Technology CSIR: Chandigarh, PB, IN

2005 to 2010 | PhD (Bioinformatics Division)
Education
Source: Self-asserted source
Mamoon Rashid

Works (22)

Metabolic traits of an uncultured archaeal lineage -MSBL1- from brine pools of the Red Sea

Scientific Reports
2016 | Journal article | Author
DOI: 10.1038/srep19181
PMID: 26758088
HANDLE: 10754/593685
Contributors: Mwirichia, Romano; Alam, Intikhab; Mamoon Rashid; Vinu, Manikandan; Wail Baalawi; Anthony Kamau, Allan; David Kamanda Ngugi; Göker, Markus; Klenk, Hans-Peter; Vladimir B Bajic; Vladimir Bajic et al.
Source: check_circle
KAUST Repository

Single cell genomes from Mediterranean Sea Brine Lakes 1 (MSBL1)

2016 | Other
HANDLE: 10754/666548
Source: check_circle
KAUST Repository

Contemporary molecular tools in microbial ecology and their application to advancing biotechnology

Biotechnology Advances
2015 | Journal article | Author
DOI: 10.1016/j.biotechadv.2015.09.005
PMID: 26409315
HANDLE: 10754/578848
Contributors: Mamoon Rashid; Uli Stingl
Source: check_circle
KAUST Repository

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

PLoS Biology
2015 | Journal article
DOI: 10.1371/journal.pbio.1002315
HANDLE: 10754/614423
Source: check_circle
KAUST Repository

Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea.

2015-02 | Journal article
DOI:

10.1038/ismej.2014.137

PMID:

25105904
Contributors: Kamanda Ngugi D; Blom J; Alam I; Rashid M; Ba-Alawi W; Zhang G; Hikmawan T; Guan Y; Antunes A; Siam R et al.
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central
grade
Preferred source (of 2)‎

Designing of peptides with desired half-life in intestine-like environment.

2014 | Journal article
DOI:

10.1186/1471-2105-15-282

PMID:

25141912

PMC:

PMC4150950
Contributors: Sharma A; Singla D; Rashid M; Raghava GP
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central
grade
Preferred source (of 2)‎

Genomic differentiation among two strains of the PS1 clade isolated from geographically separated marine habitats.

2014-07 | Journal article
DOI:

10.1111/1574-6941.12348

PMID:

24785133
Contributors: Jimenez-Infante F; Ngugi DK; Alam I; Rashid M; Baalawi W; Kamau AA; Bajic VB; Stingl U
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central
grade
Preferred source (of 2)‎

The population structure of Vibrio cholerae from the Chandigarh Region of Northern India.

2014-07 | Journal article
DOI:

10.1371/journal.pntd.0002981

PMID:

25058483

PMC:

PMC4109905
Contributors: Abd El Ghany M; Chander J; Mutreja A; Rashid M; Hill-Cawthorne GA; Ali S; Naeem R; Thomson NR; Dougan G; Pain A
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central
grade
Preferred source (of 2)‎

Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation.

2014-04 | Journal article
DOI:

10.1073/pnas.1312717110

PMID:

24706905

PMC:

PMC3986152
Contributors: Morikawa H; Ohkura N; Vandenbon A; Itoh M; Nagao-Sato S; Kawaji H; Lassmann T; Carninci P; Hayashizaki Y; Forrest AR et al.
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central

A promoter-level mammalian expression atlas.

2014-03 | Journal article
DOI:

10.1038/nature13182

PMID:

24670764
Contributors: FANTOM Consortium and the RIKEN PMI and CLST (DGT); Forrest AR; Kawaji H; Rehli M; Baillie JK; de Hoon MJ; Haberle V; Lassman T; Kulakovskiy IV; Lizio M et al.
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central
grade
Preferred source (of 2)‎

An atlas of active enhancers across human cell types and tissues.

2014-03 | Journal article
DOI:

10.1038/nature12787

PMID:

24670763
Contributors: Andersson R; Gebhard C; Miguel-Escalada I; Hoof I; Bornholdt J; Boyd M; Chen Y; Zhao X; Schmidl C; Suzuki T et al.
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central

Candidatus Micropelagos thuwalensis strain:RS24 Genome sequencing and assembly

2013 | Other
HANDLE: 10754/666427
Source: check_circle
KAUST Repository

Synthesis of visible light driven cobalt tailored Ag2O/TiON nanophotocatalyst by reverse micelle processing for degradation of Eriochrome Black T

Materials Research Bulletin
2013 | Journal article
DOI: 10.1016/j.materresbull.2012.11.021
HANDLE: 10754/562627
Source: check_circle
KAUST Repository

READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation.

2013-02 | Journal article
DOI:

10.1093/bioinformatics/bts684

PMID:

23193222

PMC:

PMC3562070
Contributors: Naeem R; Rashid M; Pain A
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central
grade
Preferred source (of 2)‎

Complete Genome Sequence of Mycobacterium phlei Type Strain RIVM601174

Journal of Bacteriology
2012 | Journal article
DOI: 10.1128/JB.00485-12
HANDLE: 10754/554102
Source: check_circle
KAUST Repository

Complete Genome Sequence of Mycobacterium xenopi Type Strain RIVM700367

Journal of Bacteriology
2012 | Journal article
DOI: 10.1128/JB.00482-12
HANDLE: 10754/554120
Source: check_circle
KAUST Repository

Mycobacterium xenopi RIVM700367 Genome sequencing and assembly

2012 | Other
HANDLE: 10754/666399
Source: check_circle
KAUST Repository

Mycolicibacterium phlei RIVM601174 Genome sequencing and assembly

2012 | Other
HANDLE: 10754/666401
Source: check_circle
KAUST Repository

A simple approach for predicting protein-protein interactions.

2010-11 | Journal article
DOI:

10.2174/138920310794109120

PMID:

20887258
Contributors: Rashid M; Ramasamy S; Raghava GP
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central

Hmrbase: a database of hormones and their receptors.

2009 | Journal article
DOI:

10.1186/1471-2164-10-307

PMID:

19589147

PMC:

PMC2720991
Contributors: Rashid M; Singla D; Sharma A; Kumar M; Raghava GP
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central

Phylogeography of mtDNA haplogroup R7 in the Indian peninsula.

2008 | Journal article
DOI:

10.1186/1471-2148-8-227

PMID:

18680585

PMC:

PMC2529308
Contributors: Chaubey G; Karmin M; Metspalu E; Metspalu M; Selvi-Rani D; Singh VK; Parik J; Solnik A; Naidu BP; Kumar A et al.
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central

Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs.

2007 | Journal article
DOI:

10.1186/1471-2105-8-337

PMID:

17854501

PMC:

PMC2147037
Contributors: Rashid M; Saha S; Raghava GP
Source: Self-asserted source
Mamoon Rashid via Europe PubMed Central
How many people are using ORCID?